Rtundo,
Do you have two hard drives? If so, you need to get the latest version from
http://strobos.cee.vt.edu/VNC. The server side, which is the culprit, is also attached here just in case. When I did this I only had one-hardrive Empegs and noticed what you are talking about when I upgraded to two drives. It has been fixed since.
FYI, I have just completed a different application that is not based on VNC (where the state remains in the server). That is much better in all aspects. Check it out at
http://strobos.cee.vt.edu/EMSC. I will make an announcement of availability shortly.
Please do let me know if the VNC problem is solved with the attached executable. But EMS&C is much better....