The whine could be due to the fact the AT supply is an SMPS, rather than the battery based analogue regulated setup you'd get in a car. You should have the in-line power filter supplied in the package fitted to the power line from the supply, as there is no in-case filtering in the empeg head unit.
You are probably hearing artefacts of high frequency, low-amplitude ripple superimposed on the 12v supply line from the SMPS which indicates poor filtering in the power unit itself. Bear in mind that computer power supplies are designed to deliver bulk quantities of 5v current for a main board, and the 12v lines are usually poorly filtered and regulated due to the relative unimportance of this supply voltage to the board (RS232 supplies, hard disks, floppies, etc.) where good regulation is of low importance. In a car, 12v is the primary supply voltage, and usually analogue regulated, so there's rarely any high-frequency stuff in there. Now had you used the supply unit from an old IBM disk pack, then I'd have been cheering you on at this point...
One of the few remaining Mk1 owners...
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